Creating an AnnData object

AnnData() Raw()

Create an Annotated Data Matrix

Concatenating two or more AnnData objects

concat()

concat

Reading an AnnData object from a file

read_csv()

read_csv

read_excel()

read_excel

read_h5ad()

read_h5ad

read_hdf()

read_hdf

read_loom()

read_loom

read_mtx()

read_mtx

read_text()

read_text

read_umi_tools()

read_umi_tools

Writing an AnnData object to a file

write_csvs()

Write annotation to .csv files.

write_h5ad()

Write .h5ad-formatted hdf5 file.

write_loom()

Write .loom-formatted hdf5 file.

Installer

Helper function for installing the anndata Python package

install_anndata()

Install anndata